CV

Education

• Ph.D in Version Control Theory, GitHub University, 2018 (expected)
• M.S. in Jekyll, GitHub University, 2014
• B.S. in GitHub, GitHub University, 2012

Work experience

• Spring 2024: Academic Pages Collaborator
  • GitHub University
  • Duties includes: Updates and improvements to template
  • Supervisor: The Users
• Fall 2015: Research Assistant
  • GitHub University
  • Duties included: Merging pull requests
  • Supervisor: Professor Hub
• Summer 2015: Research Assistant
  • GitHub University
  • Duties included: Tagging issues
  • Supervisor: Professor Git

Skills

• Skill 1
• Skill 2
  • Sub-skill 2.1
  • Sub-skill 2.2
  • Sub-skill 2.3
• Skill 3

Publications

An Ensemble Approach for Automatic Structuring of Radiology Reports

M. Pourreza Shahri, A. Tahmasebi, B. Ye, H. Zhu, J. Aslam, T. Ferris, An Ensemble Approach for Automatic Structuring of Radiology Reports, ArXiv, 2020.

DeepPPPred: An Ensemble of BERT, CNN, and RNN for Classifying Co-mentions of Proteins and Phenotypes

M. Pourreza Shahri, K. Lyon, J. Schearer, and I. Kahanda, DeepPPPred: An Ensemble of BERT, CNN, and RNN for Classifying Co-mentions of Proteins and Phenotypes, BioRxiv, 2020.

Deep Semi-supervised Ensemble Method for Classifying Co-mentions of Human Proteins and Phenotypes

M. Pourreza Shahri and I. Kahanda, Deep Semi-supervised Ensemble Method for Classifying Co-mentions of Human Proteins and Phenotypes", Intelligent Systems for Molecular Biology (ISMB), 2020."

ProPheno 1.0: An online dataset for accelerating the complete characterization of the human protein-phenotype landscape in biomedical literature

M. Pourreza Shahri and I. Kahanda, ProPheno 1.0: An online dataset for accelerating the complete characterization of the human protein-phenotype landscape in biomedical literature", 14th IEEE International Conference on Semantic Computing, 2020."

PPPred: Classifying protein-phenotype co-mentions extracted from biomedical literature

M. Pourreza Shahri, G. Reynolds, M. M. Roe, and I. Kahanda, PPPred: Classifying Protein-phenotype Co-mentions Extracted from Biomedical Literature", Proceedings of the 10th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), Niagara Falls, NY, USA, 2019."

Metamorphic Testing for Quality Assurance of Protein Function Prediction Tools

M. Pourreza Shahri, M. Srinivasan, G. Reynolds, D. Bimczok, I. Kahanda, and U. Kanewala, Metamorphic Testing for Quality Assurance of Protein Function Prediction Tools", The IEEE International Conference on Artificial Intelligence Testing, San Francisco, CA, USA, 2019."

Quality assurance of bioinformatics software: a case study of testing a biomedical text processing tool using metamorphic testing

M. Srinivasan, M. Pourreza Shahri, U. Kanewala, and I. Kahanda, Quality Assurance of Bioinformatics Software: A Case Study of Testing a Biomedical Text Processing Tool Using Metamorphic Testing", Proceedings of the 3rd International Workshop on Metamorphic Testing, ACM, Gothenburg, Sweden, 2018."

Extracting Co-mention Features from Biomedical Literature for Automated Protein Phenotype Prediction using PHENOstruct

M. Pourreza Shahri and I. Kahanda, Extracting Co-mention Features from Biomedical Literature for Automated Protein Phenotype Prediction using PHENOstruct", 10th International Conference on Bioinformatics and Computational Biology (BiCOB), Las Vegas, NV, USA, 2018."

Providing FAQ lists based on ontology

M. Pourreza Shahri, M. Kahani, and H. Ekbia, Providing FAQ lists based on ontology", 24th IEEE Iranian Conference on Electrical Engineering (ICEE), Shiraz, Iran, 2016"

Talks

Teaching

Service and leadership

• Currently signed in to 43 different slack teams